This package carries out most common analysis when performing wholegenome association studies. These analyses include descriptivestatistics and exploratory analysis of missing values, calculation ofHardy-Weinberg equilibrium, analysis of association based on generalizedlinear models (either for quantitative or binary traits), and analysisof multiple SNPs (haplotype and epistasis analysis). Permutation testand related tests (sum statistic and truncated product) are alsoimplemented. Max-statistic and genetic risk-allele score exactdistributions are also possible to be estimated.