Computes a novel metric of affinity between two entities based on their co-occurrence (using binary presence/absence data). The metric and its MLE, alpha hat, were advanced in Mainali, Slud, et al, 2021 <doi:10.1126/sciadv.abj9204>. Various types of confidence intervals and median interval were developed in Mainali and Slud, 2022 <doi:10.1101/2022.11.01.514801>. The 'finches' dataset is now bundled internally (no longer pulled via the cooccur package, which has been dropped).
| Version: | 1.0.2 |
| Depends: | R (≥ 4.1),BiasedUrn (≥ 2.0.9) |
| Imports: | cowplot,ggplot2,plyr,reshape |
| Published: | 2025-06-27 |
| DOI: | 10.32614/CRAN.package.CooccurrenceAffinity |
| Author: | Kumar Mainali [aut, cre], Eric Slud [aut] |
| Maintainer: | Kumar Mainali <kpmainali at gmail.com> |
| BugReports: | https://github.com/kpmainali/CooccurrenceAffinity/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/kpmainali/CooccurrenceAffinity |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | CooccurrenceAffinity results |
| Reference manual: | CooccurrenceAffinity.html ,CooccurrenceAffinity.pdf |
| Package source: | CooccurrenceAffinity_1.0.2.tar.gz |
| Windows binaries: | r-devel:CooccurrenceAffinity_1.0.2.zip, r-release:CooccurrenceAffinity_1.0.2.zip, r-oldrel:CooccurrenceAffinity_1.0.2.zip |
| macOS binaries: | r-release (arm64):CooccurrenceAffinity_1.0.2.tgz, r-oldrel (arm64):CooccurrenceAffinity_1.0.2.tgz, r-release (x86_64):CooccurrenceAffinity_1.0.2.tgz, r-oldrel (x86_64):CooccurrenceAffinity_1.0.2.tgz |
| Old sources: | CooccurrenceAffinity archive |
| Reverse suggests: | SEraster |
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