rChEA3: R Client for the 'ChEA3' Transcription Factor Enrichment API
Interface to the 'ChEA3' transcription factor enrichment API. 'ChEA3' integrates evidence from ChIP-seq, co-expression, and literature resources to prioritize transcription factors regulating a given set of genes. This package provides convenient R functions to query the API, retrieve ranked results across collections (including integrated scores), and standardize output for downstream analysis in R/Bioconductor workflows. See <https://maayanlab.cloud/chea3/> or Keenan (2019) <doi:10.1093/nar/gkz446> for further details.
| Version: | 0.2.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | cli,crayon,dplyr,ggplot2,httr,jsonlite,lubridate,rlang,tidyselect,writexl |
| Suggests: | knitr,readxl,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2025-10-15 |
| DOI: | 10.32614/CRAN.package.rChEA3 |
| Author: | Christophe Tav [aut, cre] |
| Maintainer: | Christophe Tav <christophe.tav at gmail.com> |
| BugReports: | https://github.com/ckntav/rChEA3/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/ckntav/rChEA3,https://ckntav.github.io/rChEA3/ |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | rChEA3 results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=rChEA3to link to this page.