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ClustAssess: Tools for Assessing Clustering

A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) <doi:10.1038/srep06207>), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis.

Version:	1.1.0
Depends:	R (≥ 4.0.0), methods, stats
Imports:	dplyr,DT,fastcluster,foreach,glue,Gmedian,ggnewscale,ggplot2,ggrastr,ggrepel,ggtext,gprofiler2,igraph,jsonlite,leiden,Matrix (≥ 1.5.0),matrixStats,progress,stringr,paletteer,plotly,qualpalr,RANN,reshape2,rlang,Seurat,shiny,shinyjs,shinyLP,shinyWidgets, utils,uwot,vioplot
LinkingTo:	Rcpp,RcppEigen
Suggests:	BiocManager,colourpicker,ComplexHeatmap,data.table,DelayedMatrixStats,devtools,doParallel,leidenbase, monocle3,patchwork,ragg,reticulate,rhdf5,RhpcBLASctl,rmarkdown,scales,SeuratObject,SharedObject,styler,testthat (≥ 3.0.0)
Published:	2025-05-27
DOI:	10.32614/CRAN.package.ClustAssess
Author:	Andi Munteanu [aut, cre], Arash Shahsavari [aut], Rafael Kollyfas [ctb], Miguel Larraz Lopez de Novales [aut], Liviu Ciortuz [ctb], Irina Mohorianu [aut]
Maintainer:	Andi Munteanu <am3019 at cam.ac.uk>
BugReports:	https://github.com/Core-Bioinformatics/ClustAssess/issues
License:	MIT + fileLICENSE
URL:	https://github.com/Core-Bioinformatics/ClustAssess,https://core-bioinformatics.github.io/ClustAssess/
NeedsCompilation:	yes
Additional_repositories:	https://blaserlab.r-universe.dev
Citation:	ClustAssess citation info
Materials:	README,NEWS
CRAN checks:	ClustAssess results

Documentation:

Reference manual:

ClustAssess.html ,ClustAssess.pdf

Downloads:

Package source:	ClustAssess_1.1.0.tar.gz
Windows binaries:	r-devel:ClustAssess_1.1.0.zip, r-release:ClustAssess_1.1.0.zip, r-oldrel:ClustAssess_1.1.0.zip
macOS binaries:	r-release (arm64):ClustAssess_1.1.0.tgz, r-oldrel (arm64):ClustAssess_1.1.0.tgz, r-release (x86_64):ClustAssess_1.1.0.tgz, r-oldrel (x86_64):ClustAssess_1.1.0.tgz
Old sources:	ClustAssess archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=ClustAssessto link to this page.