Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0),ggplot2 (≥ 2.2.1),phyloseq (≥ 1.24.0) |
| Imports: | ggnetwork (≥ 0.5.1),igraph (≥ 1.1.2) |
| Suggests: | knitr,rmarkdown |
| Published: | 2024-02-05 |
| DOI: | 10.32614/CRAN.package.phyloseqGraphTest |
| Author: | Julia Fukuyama [aut, cre] |
| Maintainer: | Julia Fukuyama <julia.fukuyama at gmail.com> |
| License: | CC0 |
| URL: | https://github.com/jfukuyama/phyloseqGraphTest |
| NeedsCompilation: | no |
| CRAN checks: | phyloseqGraphTest results |
| Reference manual: | phyloseqGraphTest.html ,phyloseqGraphTest.pdf |
| Vignettes: | Graph Testing Vignette (source,R code) |
| Package source: | phyloseqGraphTest_0.1.1.tar.gz |
| Windows binaries: | r-devel:phyloseqGraphTest_0.1.1.zip, r-release:phyloseqGraphTest_0.1.1.zip, r-oldrel:phyloseqGraphTest_0.1.1.zip |
| macOS binaries: | r-release (arm64):phyloseqGraphTest_0.1.1.tgz, r-oldrel (arm64):phyloseqGraphTest_0.1.1.tgz, r-release (x86_64):phyloseqGraphTest_0.1.1.tgz, r-oldrel (x86_64):phyloseqGraphTest_0.1.1.tgz |
| Old sources: | phyloseqGraphTest archive |
| Reverse suggests: | MiscMetabar,pctax |
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