PepMapViz: A Versatile Toolkit for Peptide Mapping, Visualization, andComparative Exploration
A versatile R visualization package that empowers researchers with comprehensive visualization tools for seamlessly mapping peptides to protein sequences, identifying distinct domains and regions of interest, accentuating mutations, and highlighting post-translational modifications, all while enabling comparisons across diverse experimental conditions. Potential applications of 'PepMapViz' include the visualization of cross-software mass spectrometry results at the peptide level for specific protein and domain details in a linearized format and post-translational modification coverage across different experimental conditions; unraveling insights into disease mechanisms. It also enables visualization of Major histocompatibility complex-presented peptide clusters in different antibody regions predicting immunogenicity in antibody drug development.
| Version: | 1.1.0 |
| Imports: | shiny,ggplot2,stringr,ggforce,ggh4x,ggnewscale,data.table,rlang,DT |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0),mzID,MSnbase |
| Published: | 2025-06-25 |
| DOI: | 10.32614/CRAN.package.PepMapViz |
| Author: | Zhenru Zhou [aut, cre], Qui Phung [aut], Corey Bakalarski [aut] |
| Maintainer: | Zhenru Zhou <zhou.zhenru at gene.com> |
| License: | MIT + fileLICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | PepMapViz results |
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