QuICSeedR: Analyze Data for Fluorophore-Assisted Seed Amplification Assays
A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.
| Version: | 0.1.2 |
| Depends: | R (≥ 4.1.0) |
| Imports: | WRS2,magrittr, graphics, stats,ggplot2, methods,dplyr,tidyr,tidyselect,rlang,readxl |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2024-09-02 |
| DOI: | 10.32614/CRAN.package.QuICSeedR |
| Author: | Manci Li [aut, cre] |
| Maintainer: | Manci Li <li000021 at umn.edu> |
| License: | GPL-3 | fileLICENSE |
| Copyright: | Manci Li |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | QuICSeedR results |
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