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coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Version:5.2.3
Depends:R (≥ 3.5)
Imports:data.table,ggplot2, methods,viridis, stats, grDevices,susieR (≥ 0.12.06), utils
Suggests:knitr,testthat,mvtnorm,magrittr,rmarkdown
Published:2023-10-03
DOI:10.32614/CRAN.package.coloc
Author:Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Maintainer:Chris Wallace <cew54 at cam.ac.uk>
BugReports:https://github.com/chr1swallace/coloc/issues
License:GPL-2 |GPL-3 [expanded from: GPL]
URL:https://github.com/chr1swallace/coloc
NeedsCompilation:no
Citation:coloc citation info
Materials:README,NEWS
CRAN checks:coloc results

Documentation:

Reference manual:coloc.html ,coloc.pdf
Vignettes:Coloc: a package for colocalisation analyses (source)
Coloc: data structures (source,R code)
Coloc: under a single causal variant assumption (source,R code)
Coloc: sensitivity to prior values (source,R code)
DEPRECATED Coloc: relaxing the single causal variant assumption (source,R code)
Coloc: using SuSiE to relax the single causal variant assumption (source,R code)

Downloads:

Package source: coloc_5.2.3.tar.gz
Windows binaries: r-devel:coloc_5.2.3.zip, r-release:coloc_5.2.3.zip, r-oldrel:coloc_5.2.3.zip
macOS binaries: r-release (arm64):coloc_5.2.3.tgz, r-oldrel (arm64):coloc_5.2.3.tgz, r-release (x86_64):coloc_5.2.3.tgz, r-oldrel (x86_64):coloc_5.2.3.tgz
Old sources: coloc archive

Reverse dependencies:

Reverse imports:colocPropTest,cophescan

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=colocto link to this page.


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