Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer(). For further details see Jombart et al. (2017) <doi:10.1111/1755-0998.12676>.
| Version: | 1.1.4.4 |
| Depends: | R (≥ 3.4.0),ape,ade4 |
| Imports: | adegenet,adegraphics,combinat, compiler,distory,fields,htmlwidgets,MASS, methods, parallel,phangorn,phytools,Rcpp,rgl,RLumShiny,scatterD3,shiny,shinyBS, utils |
| LinkingTo: | Rcpp |
| Suggests: | ggplot2,igraph,knitr,pander,RColorBrewer,reshape2,rmarkdown,sf,testthat |
| Published: | 2025-08-27 |
| DOI: | 10.32614/CRAN.package.treespace |
| Author: | Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut] |
| Maintainer: | Michelle Kendall <michelle.kendall at ndm.ox.ac.uk> |
| BugReports: | https://github.com/thibautjombart/treespace/issues |
| License: | MIT + fileLICENSE |
| URL: | https://cran.r-project.org/package=treespace,https://github.com/thibautjombart/treespace |
| NeedsCompilation: | yes |
| Citation: | treespace citation info |
| Materials: | README,NEWS |
| In views: | Phylogenetics |
| CRAN checks: | treespace results |