PLNmodels: Poisson Lognormal Models
The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin, 2021 <doi:10.3389/fevo.2021.588292>) can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data, discriminant analysis, model-based clustering and network inference. Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.
| Version: | 1.2.2 |
| Depends: | R (≥ 4.1.0) |
| Imports: | cli,corrplot,dplyr,future,future.apply,ggplot2,glassoFast, grDevices, grid,gridExtra,igraph,magrittr,MASS,Matrix, methods,nloptr, parallel,pscl,purrr,R6,Rcpp,rlang,scales, stats,tidyr,torch |
| LinkingTo: | nloptr,Rcpp,RcppArmadillo |
| Suggests: | factoextra,knitr,rmarkdown,spelling,testthat |
| Published: | 2025-03-21 |
| DOI: | 10.32614/CRAN.package.PLNmodels |
| Author: | Julien Chiquet [aut, cre], Mahendra Mariadassou [aut], Stéphane Robin [aut], François Gindraud [aut], Julie Aubert [ctb], Bastien Batardière [ctb], Giovanni Poggiato [ctb], Cole Trapnell [ctb], Maddy Duran [ctb] |
| Maintainer: | Julien Chiquet <julien.chiquet at inrae.fr> |
| BugReports: | https://github.com/pln-team/PLNmodels/issues |
| License: | GPL (≥ 3) |
| URL: | https://pln-team.github.io/PLNmodels/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | PLNmodels citation info |
| Materials: | NEWS |
| CRAN checks: | PLNmodels results |
Documentation:
Downloads:
| Package source: | PLNmodels_1.2.2.tar.gz |
| Windows binaries: | r-devel:PLNmodels_1.2.2.zip, r-release:PLNmodels_1.2.2.zip, r-oldrel:PLNmodels_1.2.2.zip |
| macOS binaries: | r-release (arm64):PLNmodels_1.2.2.tgz, r-oldrel (arm64):PLNmodels_1.2.2.tgz, r-release (x86_64):PLNmodels_1.2.2.tgz, r-oldrel (x86_64):PLNmodels_1.2.2.tgz |
| Old sources: | PLNmodels archive |
Linking:
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