htrSPRanalysis: Analysis of Surface Plasmon Resonance Data
Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
| Version: | 0.1.0 |
| Imports: | magrittr,readxl,openxlsx,minpack.lm,zoo, stats,gridExtra, grid, parallel,readr,rlang,dplyr,stringr,tidyselect,ggplot2,purrr,forcats,tibble,tidyr |
| Suggests: | knitr,rmarkdown,markdown,qpdf |
| Published: | 2024-08-26 |
| DOI: | 10.32614/CRAN.package.htrSPRanalysis |
| Author: | Janice McCarthy Developer [aut, cre, cph], Kan Li Dev [aut], S. Moses Dennison [aut], Georgia D. Tomaras [aut] |
| Maintainer: | Janice McCarthy Developer <janice.mccarthy at duke.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | htrSPRanalysis results |
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