combiroc: Selection and Ranking of Omics Biomarkers Combinations Made Easy
Provides functions and a workflow to easily and powerfully calculating specificity, sensitivity and ROC curves of biomarkers combinations. Allows to rank and select multi-markers signatures as well as to find the best performing sub-signatures, now also from single-cell RNA-seq datasets. The method used was first published as a Shiny app and described in Mazzara et al. (2017) <doi:10.1038/srep45477> and further described in Bombaci & Rossi (2019) <doi:10.1007/978-1-4939-9164-8_16>, and widely expanded as a package as presented in the bioRxiv pre print Ferrari et al. <doi:10.1101/2022.01.17.476603>.
| Version: | 0.3.4 |
| Depends: | R (≥ 3.5.0) |
| Imports: | tidyr,dplyr,ggplot2,gtools,pROC,stringr, stats, utils,moments |
| Suggests: | testthat (≥ 3.0.0),knitr,markdown,rmarkdown,httr,Seurat |
| Published: | 2023-07-06 |
| DOI: | 10.32614/CRAN.package.combiroc |
| Author: | Ivan Ferrari [aut], Riccardo L. Rossi [aut, cre], Saveria Mazzara [aut], Mauro Bombaci [ccp, ctb, dtc] |
| Maintainer: | Riccardo L. Rossi <ric.rossi at gmail.com> |
| BugReports: | https://github.com/ingmbioinfo/combiroc/issues |
| License: | MIT + fileLICENSE |
| URL: | https://doi.org/10.1101/2022.01.17.476603,https://github.com/ingmbioinfo/combiroc |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README,NEWS |
| CRAN checks: | combiroc results |
Documentation:
| Reference manual: | combiroc.html ,combiroc.pdf |
| Vignettes: | Quick guide to CombiROC (source,R code) Single cell Combiroc tutorial (source,R code) |
Downloads:
| Package source: | combiroc_0.3.4.tar.gz |
| Windows binaries: | r-devel:combiroc_0.3.4.zip, r-release:combiroc_0.3.4.zip, r-oldrel:combiroc_0.3.4.zip |
| macOS binaries: | r-release (arm64):combiroc_0.3.4.tgz, r-oldrel (arm64):combiroc_0.3.4.tgz, r-release (x86_64):combiroc_0.3.4.tgz, r-oldrel (x86_64):combiroc_0.3.4.tgz |
| Old sources: | combiroc archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=combirocto link to this page.