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umap: Uniform Manifold Approximation and Projection

Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in <doi:10.48550/arXiv.1802.03426>. This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).

Version:0.2.10.0
Depends:R (≥ 3.6.0)
Imports:Matrix, methods,openssl,reticulate,Rcpp (≥ 0.12.6),RSpectra, stats
LinkingTo:Rcpp
Suggests:knitr,rmarkdown,testthat
Published:2023-02-01
DOI:10.32614/CRAN.package.umap
Author:Tomasz Konopka [aut, cre]
Maintainer:Tomasz Konopka <tokonopka at gmail.com>
BugReports:https://github.com/tkonopka/umap/issues
License:MIT + fileLICENSE
URL:https://github.com/tkonopka/umap
NeedsCompilation:yes
CRAN checks:umap results

Documentation:

Reference manual:umap.html ,umap.pdf
Vignettes:Uniform Manifold Approximation and Projection in R (source,R code)
Interfacing with 'umap-learn' (source,R code)

Downloads:

Package source: umap_0.2.10.0.tar.gz
Windows binaries: r-devel:umap_0.2.10.0.zip, r-release:umap_0.2.10.0.zip, r-oldrel:umap_0.2.10.0.zip
macOS binaries: r-release (arm64):umap_0.2.10.0.tgz, r-oldrel (arm64):umap_0.2.10.0.tgz, r-release (x86_64):umap_0.2.10.0.tgz, r-oldrel (x86_64):umap_0.2.10.0.tgz
Old sources: umap archive

Reverse dependencies:

Reverse imports:animalcules,BatchQC,CelliD,chameleon,ChromSCape,Coralysis,EmbedSOM,emcAdr,FateID,ggpca,ggsem,HIPPO,HVT,ILoReg,InterCellar,jrSiCKLSNMF,karyotapR,M3C,MatrixQCvis,Mercator,musclesyneRgies,nevada,PhyloProfile,PIUMA,polarisR,projectR,RaceID,RCSL,regioneReloaded,rrvgo,RSDA,SaturnCoefficient,scDataviz,scDesign3,sRACIPE,stPipe,SuperCell,tall,theftdlc,tomoda,varPro
Reverse suggests:cola,crosshap,dimRed,HDCytoData,MiscMetabar,NGCHM,OlinkAnalyze,OTclust,pctax,Platypus,ProjectionBasedClustering,pRoloc,qeML,scPipe,seriation,SPIAT,topolow,UCSCXenaShiny

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=umapto link to this page.


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