An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) <doi:10.1016/j.isci.2020.100882> for more details.
| Version: | 3.2.2 |
| Depends: | R (≥ 4.0.0) |
| Imports: | Matrix, methods,progress, stats,reshape2 |
| Suggests: | rmarkdown,knitr,testthat,prettydoc |
| Published: | 2023-04-23 |
| DOI: | 10.32614/CRAN.package.scCATCH |
| Author: | Xin Shao |
| Maintainer: | Xin Shao <xin_shao at zju.edu.cn> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/ZJUFanLab/scCATCH |
| NeedsCompilation: | no |
| Citation: | scCATCH citation info |
| Materials: | README |
| CRAN checks: | scCATCH results |
| Reference manual: | scCATCH.html ,scCATCH.pdf |
| Vignettes: | scCATCH tutorial (source,R code) |
| Package source: | scCATCH_3.2.2.tar.gz |
| Windows binaries: | r-devel:scCATCH_3.2.2.zip, r-release:scCATCH_3.2.2.zip, r-oldrel:scCATCH_3.2.2.zip |
| macOS binaries: | r-release (arm64):scCATCH_3.2.2.tgz, r-oldrel (arm64):scCATCH_3.2.2.tgz, r-release (x86_64):scCATCH_3.2.2.tgz, r-oldrel (x86_64):scCATCH_3.2.2.tgz |
| Old sources: | scCATCH archive |
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