The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
| Version: | 1.0.0 |
| Depends: | ggplot2,reshape2 |
| Imports: | grid |
| Suggests: | knitr,dendsort,RColorBrewer,rmarkdown |
| Published: | 2024-01-22 |
| DOI: | 10.32614/CRAN.package.gapmap |
| Author: | Ryo Sakai [aut], Evan Biederstedt [cre, aut] |
| Maintainer: | Evan Biederstedt <evan.biederstedt at gmail.com> |
| BugReports: | https://github.com/evanbiederstedt/gapmap/issues |
| License: | GPL-2 |GPL-3 |
| URL: | https://github.com/evanbiederstedt/gapmap |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | gapmap results |
| Reference manual: | gapmap.html ,gapmap.pdf |
| Vignettes: | "An introduction to the gapmap package" (source,R code) "Example with a TCGA dataset" (source,R code) |
| Package source: | gapmap_1.0.0.tar.gz |
| Windows binaries: | r-devel:gapmap_1.0.0.zip, r-release:gapmap_1.0.0.zip, r-oldrel:gapmap_1.0.0.zip |
| macOS binaries: | r-release (arm64):gapmap_1.0.0.tgz, r-oldrel (arm64):gapmap_1.0.0.tgz, r-release (x86_64):gapmap_1.0.0.tgz, r-oldrel (x86_64):gapmap_1.0.0.tgz |
| Old sources: | gapmap archive |
| Reverse suggests: | dendsort |
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