linelistBayes: Bayesian Analysis of Epidemic Data Using Line List and CaseCount Approaches
Provides tools for performing Bayesian inference on epidemiological data to estimate the time-varying reproductive number and other related metrics. These methods were published in Li and White (2021) <doi:10.1371/journal.pcbi.1009210>. This package supports analyses based on aggregated case count data and individual line list data, facilitating enhanced surveillance and intervention planning for infectious diseases like COVID-19.
| Version: | 1.0 |
| Depends: | R (≥ 2.10) |
| Imports: | Rcpp (≥ 1.0.11),magrittr,lubridate,coda,dplyr |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2024-05-03 |
| DOI: | 10.32614/CRAN.package.linelistBayes |
| Author: | Chad Milando [aut, cre], Tenglong Li [ctb], Laura White [ctb] |
| Maintainer: | Chad Milando <cmilando at bu.edu> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | Epidemiology |
| CRAN checks: | linelistBayes results |
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