mppR: Multi-Parent Population QTL Analysis
Analysis of experimental multi-parent populations to detect regions of the genome (called quantitative trait loci, QTLs) influencing phenotypic traits measured in unique and multiple environments. The population must be composed of crosses between a set of at least three parents (e.g. factorial design, 'diallel', or nested association mapping). The functions cover data processing, QTL detection, and results visualization. The implemented methodology is described in Garin, Wimmer, Mezmouk, Malosetti and van Eeuwijk (2017) <doi:10.1007/s00122-017-2923-3>, in Garin, Malosetti and van Eeuwijk (2020) <doi:10.1007/s00122-020-03621-0>, and in Garin, Diallo, Tekete, Thera, ..., and Rami (2024) <doi:10.1093/genetics/iyae003>.
| Version: | 1.5.0 |
| Depends: | R (≥ 3.1.0) |
| Imports: | dplyr,ggplot2, graphics, grDevices,igraph,Matrix, methods,nlme, parallel,qtl, stats, utils |
| Suggests: | knitr,rmarkdown,testthat |
| Published: | 2024-02-22 |
| DOI: | 10.32614/CRAN.package.mppR |
| Author: | Vincent Garin [aut, cre], Valentin Wimmer [aut], Dietrich Borchardt [ctb, dtc], Fred van Eeuwijk [ctb, ths], Marcos Malosetti [ctb, ths] |
| Maintainer: | Vincent Garin <vincent.garin6 at gmail.com> |
| BugReports: | https://github.com/vincentgarin/mppR/issues |
| License: | GPL-3 |
| URL: | https://github.com/vincentgarin/mppR |
| NeedsCompilation: | no |
| Citation: | mppR citation info |
| Materials: | README,NEWS |
| CRAN checks: | mppR results |
Documentation:
Downloads:
| Package source: | mppR_1.5.0.tar.gz |
| Windows binaries: | r-devel:mppR_1.5.0.zip, r-release:mppR_1.5.0.zip, r-oldrel:mppR_1.5.0.zip |
| macOS binaries: | r-release (arm64):mppR_1.5.0.tgz, r-oldrel (arm64):mppR_1.5.0.tgz, r-release (x86_64):mppR_1.5.0.tgz, r-oldrel (x86_64):mppR_1.5.0.tgz |
| Old sources: | mppR archive |
Linking:
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