MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).
| Version: | 1.0.4 |
| Depends: | R (≥ 3.6),dplyr (≥ 0.7.3),tidygraph (≥ 1.0.0.9999) |
| Imports: | Rcpp (≥ 0.12.7),RcppProgress (≥ 0.2.1),RcppArmadillo (≥0.9.880.1.0),igraph (≥ 1.0.1),tibble (≥ 1.1),magrittr (≥1.5), methods |
| LinkingTo: | Rcpp,RcppArmadillo,RcppProgress |
| Suggests: | knitr,rmarkdown,testthat,ggraph,dirmult,Rmpfr |
| Published: | 2025-08-19 |
| DOI: | 10.32614/CRAN.package.malan |
| Author: | Mikkel Meyer Andersen [aut, cre] |
| Maintainer: | Mikkel Meyer Andersen <mikl at math.aau.dk> |
| BugReports: | https://github.com/mikldk/malan/issues |
| License: | GPL-2 | fileLICENSE |
| URL: | https://mikldk.github.io/malan/ |
| NeedsCompilation: | yes |
| Citation: | malan citation info |
| Materials: | README,NEWS |
| CRAN checks: | malan results |
| Reference manual: | malan.html ,malan.pdf |
| Vignettes: | Case study: Partial profiles (source,R code) Introduction (source,R code) |
| Package source: | malan_1.0.4.tar.gz |
| Windows binaries: | r-devel:malan_1.0.4.zip, r-release:malan_1.0.4.zip, r-oldrel:malan_1.0.4.zip |
| macOS binaries: | r-release (arm64):malan_1.0.4.tgz, r-oldrel (arm64):malan_1.0.4.tgz, r-release (x86_64):malan_1.0.4.tgz, r-oldrel (x86_64):malan_1.0.4.tgz |
| Old sources: | malan archive |
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