Estimating the force of infection from time varying, age varying, or constant serocatalytic models from population based seroprevalence studies using a Bayesian framework, including data simulation functions enabling the generation of serological surveys based on this models. This tool also provides a flexible prior specification syntax for the force of infection and the seroreversion rate, as well as methods to assess model convergence and comparison criteria along with useful visualisation functions.
| Version: | 1.0.3 |
| Depends: | R (≥ 4.1.0) |
| Imports: | bayesplot,checkmate,config,cowplot,dplyr,ggplot2,glue, graphics,loo,expm, methods,purrr,Rcpp (≥ 0.12.0),rstan (≥ 2.18.1),rstantools (≥ 2.3.1), stats,tibble,tidyr |
| LinkingTo: | BH (≥ 1.66.0),Rcpp (≥ 0.12.0),RcppEigen (≥ 0.3.3.3.0),RcppParallel (≥ 5.0.1),rstan (≥ 2.18.1),StanHeaders (≥2.18.0) |
| Suggests: | knitr,rlang,rmarkdown,scales,spelling,testthat (≥3.0.0) |
| Published: | 2025-03-31 |
| DOI: | 10.32614/CRAN.package.serofoi |
| Author: | Zulma M. Cucunubá [aut, cre], Nicolás T. Domínguez [aut], Ben Lambert [aut], Pierre Nouvellet [aut], Geraldine Gómez [ctb], Jaime A. Pavlich-Mariscal [ctb], Hugo Gruson [ctb], David Santiago Quevedo [ctb], Miguel Gámez [ctb], Sumali Bajaj [ctb], Everlyn Kamau [ctb], Richard Creswell [ctb], International Development Research Center (IDRC) [fnd], Pontificia Universidad Javeriana [cph] |
| Maintainer: | Zulma M. Cucunubá <zulma.cucunuba at javeriana.edu.co> |
| BugReports: | https://github.com/epiverse-trace/serofoi/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/epiverse-trace/serofoi,https://epiverse-trace.github.io/serofoi/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Language: | en-GB |
| Materials: | README,NEWS |
| CRAN checks: | serofoi results |