A fast and intuitive batch effect removal tool for single-cell data. BBKNN is originally used in the 'scanpy' python package, and now can be used with 'Seurat' seamlessly.
| Version: | 2.0.2 |
| Depends: | R (≥ 4.1.0), methods, utils |
| Imports: | future,future.apply,glmnet,Rcpp,RcppAnnoy,RcppEigen,rlang,rnndescent,Rtsne,Seurat,SeuratObject,tidytable,uwot (≥ 0.2.1) |
| LinkingTo: | Rcpp (≥ 1.0.8),RcppEigen |
| Suggests: | dplyr,knitr,rmarkdown,testthat (≥ 3.0.0),patchwork |
| Published: | 2025-09-09 |
| DOI: | 10.32614/CRAN.package.bbknnR |
| Author: | Yuchen Li [aut, cre] |
| Maintainer: | Yuchen Li <ycli1995 at outlook.com> |
| BugReports: | https://github.com/ycli1995/bbknnR/issues |
| License: | MIT + fileLICENSE |
| URL: | https://github.com/ycli1995/bbknnR,https://github.com/Teichlab/bbknn,https://bbknn.readthedocs.io/en/latest/ |
| NeedsCompilation: | yes |
| Materials: | README |
| CRAN checks: | bbknnR results |