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statgenIBD

statgenIBD is an R package for calculating IdentityBy Descent (IBD) probabilities for biparental, three and four-waycrosses. Calculations are based on Hidden Markov Models (HMM) andinheritance vectors. The HMM calculations are implemented inRcpp/C++.

For more complicated pedigreesRABBIT can be used tocalculate the IBDs.

Installation

• Install from CRAN:

install.packages("statgenIBD")

• Install latest development version from GitHub (requiresremotes package):

remotes::install_github("Biometris/statgenIBD",ref ="develop",dependencies =TRUE)