Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
| Version: | 0.68.0 |
| Depends: | R (≥ 3.2.0) |
| Imports: | R.methodsS3 (≥ 1.8.2),R.oo (≥ 1.25.0),R.utils (≥ 2.12.0),R.cache (≥ 0.16.0),matrixStats (≥ 0.62.0),aroma.light (≥2.4.0),DNAcopy (≥ 1.42.0),future (≥ 1.28.0), parallel, graphics, grDevices, stats, utils |
| Suggests: | R.rsp (≥ 0.45.0),R.devices (≥ 2.17.1),ggplot2 (≥ 3.2.1) |
| Published: | 2025-04-18 |
| DOI: | 10.32614/CRAN.package.PSCBS |
| Author: | Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut], Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from Hmisc::wtd.quantile()) |
| Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
| BugReports: | https://github.com/HenrikBengtsson/PSCBS/issues |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/HenrikBengtsson/PSCBS |
| NeedsCompilation: | no |
| Citation: | PSCBS citation info |
| Materials: | README,NEWS |
| In views: | Omics |
| CRAN checks: | PSCBS results |