Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling (Tikhonov et al. (2020) <doi:10.1111/2041-210X.13345>).
| Version: | 3.3-7 |
| Depends: | R (≥ 3.0.2),coda |
| Imports: | abind,ape,BayesLogit,fields,FNN,ggplot2,MASS,Matrix,matrixStats,MCMCpack, methods,nnet,rlang, parallel,pracma,pROC,sp,statmod,truncnorm |
| Suggests: | R.rsp,testthat,corrplot |
| Published: | 2025-08-28 |
| DOI: | 10.32614/CRAN.package.Hmsc |
| Author: | Gleb Tikhonov [aut], Otso Ovaskainen [aut, cre], Jari Oksanen [aut], Melinda de Jonge [aut], Oystein Opedal [aut], Tad Dallas [aut] |
| Maintainer: | Otso Ovaskainen <otso.t.ovaskainen at jyu.fi> |
| BugReports: | https://github.com/hmsc-r/HMSC/issues/ |
| License: | GPL-3 | fileLICENSE |
| URL: | https://www.helsinki.fi/en/researchgroups/statistical-ecology/software/hmsc |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| In views: | Environmetrics |
| CRAN checks: | Hmsc results |