babette: Control 'BEAST2'
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.
| Version: | 2.3.4 |
| Depends: | beautier (≥ 2.6.12),beastier (≥ 2.5),mauricer (≥ 2.5.2), R (≥ 3.5.0),tracerer |
| Imports: | phangorn,rlang (≥ 1.1.0),stringr,xml2 |
| Suggests: | ape,ggplot2,knitr,lintr,nLTT,rappdirs,rmarkdown,spelling,testthat (≥ 2.1.0) |
| Published: | 2024-06-25 |
| DOI: | 10.32614/CRAN.package.babette |
| Author: | Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), Jason Griffiths [ctb], Olivier Roy [ctb], Giovanni Laudanno [ctb] |
| Maintainer: | Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com> |
| BugReports: | https://github.com/ropensci/babette/issues |
| License: | GPL-3 |
| URL: | https://docs.ropensci.org/babette/ (website),https://github.com/ropensci/babette |
| NeedsCompilation: | no |
| SystemRequirements: | BEAST2 (https://www.beast2.org/) |
| Language: | en-US |
| Citation: | babette citation info |
| In views: | Phylogenetics |
| CRAN checks: | babette results |
Documentation:
| Reference manual: | babette.html ,babette.pdf |
| Vignettes: | babette demo (source,R code) Examples (source,R code) Nested Sampling (source,R code) babette: Step by Step (source,R code) babette Tutorial (source,R code) |
Downloads:
| Package source: | babette_2.3.4.tar.gz |
| Windows binaries: | r-devel:babette_2.3.4.zip, r-release:babette_2.3.4.zip, r-oldrel:babette_2.3.4.zip |
| macOS binaries: | r-release (arm64):babette_2.3.4.tgz, r-oldrel (arm64):babette_2.3.4.tgz, r-release (x86_64):babette_2.3.4.tgz, r-oldrel (x86_64):babette_2.3.4.tgz |
| Old sources: | babette archive |
Reverse dependencies:
| Reverse imports: | mcbette |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=babetteto link to this page.