ecostate: State-Space Mass-Balance Model for Marine Ecosystems
Fits a state-space mass-balance model for marine ecosystems,which implements dynamics derived from 'Ecopath with Ecosim' ('EwE') <https://ecopath.org/>while fitting to time-series of fishery catch, biomass indices,age-composition samples, and weight-at-age data. 'Ecostate' fits biological parameters (e.g., equilibrium mass)and measurement parameters (e.g., catchability coefficients)jointly with residual variation in process errors, and can includeBayesian priors for parameters.
| Version: | 0.3.0 |
| Depends: | R (≥ 4.1.0),RTMB (≥ 1.5.0) |
| Imports: | TMB,MASS,checkmate,ggplot2,ggnetwork,igraph |
| Suggests: | knitr,rmarkdown |
| Published: | 2025-09-08 |
| DOI: | 10.32614/CRAN.package.ecostate |
| Author: | James T. Thorson [aut, cre] |
| Maintainer: | James T. Thorson <James.Thorson at noaa.gov> |
| BugReports: | https://github.com/James-Thorson-NOAA/ecostate/issues |
| License: | GPL-3 |
| URL: | https://james-thorson-noaa.github.io/ecostate/ |
| NeedsCompilation: | no |
| Citation: | ecostate citation info |
| Materials: | README,NEWS |
| CRAN checks: | ecostate results |
Documentation:
| Reference manual: | ecostate.html ,ecostate.pdf |
| Vignettes: | ecostate model description (source,R code) |
Downloads:
| Package source: | ecostate_0.3.0.tar.gz |
| Windows binaries: | r-devel:ecostate_0.3.0.zip, r-release:ecostate_0.3.0.zip, r-oldrel:ecostate_0.3.0.zip |
| macOS binaries: | r-release (arm64):ecostate_0.3.0.tgz, r-oldrel (arm64):ecostate_0.3.0.tgz, r-release (x86_64):ecostate_0.3.0.tgz, r-oldrel (x86_64):ecostate_0.3.0.tgz |
| Old sources: | ecostate archive |
Linking:
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