PopVar: Genomic Breeding Tools: Genetic Variance Prediction andCross-Validation
The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). A dataset 'think_barley.rda' is included for reference and examples.
| Version: | 1.3.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | BGLR,qtl,rrBLUP, stats, utils, methods, parallel |
| Suggests: | knitr,rmarkdown |
| Published: | 2024-10-20 |
| DOI: | 10.32614/CRAN.package.PopVar |
| Author: | Tyler Tiede [aut], Jeffrey Neyhart [aut, ctb, cre], Mohsen Mohammadi [ctb], Kevin Smith [ctb] |
| Maintainer: | Jeffrey Neyhart <neyhartje at gmail.com> |
| BugReports: | https://github.com/UMN-BarleyOatSilphium/PopVar/issues |
| License: | GPL-3 |
| URL: | https://github.com/UMN-BarleyOatSilphium/PopVar |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| In views: | Agriculture |
| CRAN checks: | PopVar results |
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