glyrepr: Representation for Glycan Compositions and Structures
Computational representations of glycan compositions and structures, including details such as linkages, anomers, and substituents. Supports varying levels of monosaccharide specificity (e.g., "Hex" or "Gal") and ambiguous linkages. Provides robust parsing and generation of IUPAC-condensed structure strings. Optimized for vectorized operations on glycan structures, with efficient handling of duplications. As the cornerstone of the glycoverse ecosystem, this package delivers the foundational data structures that power glycomics and glycoproteomics analysis workflows.
| Version: | 0.9.0 |
| Imports: | checkmate,cli,dplyr,furrr,future,glue,igraph,magrittr,pillar,purrr,rlang,rstackdeque,stringr,vctrs (≥ 0.6.5) |
| Suggests: | testthat (≥ 3.0.0),patrick,tibble,knitr,rmarkdown,tictoc,lobstr |
| Published: | 2025-11-23 |
| DOI: | 10.32614/CRAN.package.glyrepr |
| Author: | Bin Fu [aut, cre, cph] |
| Maintainer: | Bin Fu <23110220018 at m.fudan.edu.cn> |
| BugReports: | https://github.com/glycoverse/glyrepr/issues |
| License: | MIT + fileLICENSE |
| URL: | https://glycoverse.github.io/glyrepr/,https://github.com/glycoverse/glyrepr |
| NeedsCompilation: | no |
| Materials: | README,NEWS |
| CRAN checks: | glyrepr results |
Documentation:
| Reference manual: | glyrepr.html ,glyrepr.pdf |
| Vignettes: | Glycan Graphs (source,R code) Getting Started with glyrepr (source,R code) Power User Guide: Efficient Glycan Manipulation (source,R code) |
Downloads:
| Package source: | glyrepr_0.9.0.tar.gz |
| Windows binaries: | r-devel:glyrepr_0.9.0.zip, r-release:glyrepr_0.9.0.zip, r-oldrel:glyrepr_0.9.0.zip |
| macOS binaries: | r-release (arm64):glyrepr_0.9.0.tgz, r-oldrel (arm64):glyrepr_0.9.0.tgz, r-release (x86_64):glyrepr_0.9.0.tgz, r-oldrel (x86_64):glyrepr_0.9.0.tgz |
| Old sources: | glyrepr archive |
Reverse dependencies:
| Reverse imports: | glyparse |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=glyreprto link to this page.