gprofiler2: Interface to the 'g:Profiler' Toolset
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
| Version: | 0.2.4 |
| Depends: | R (≥ 3.5) |
| Imports: | jsonlite,RCurl,ggplot2,plotly,tidyr (≥ 1.0.0),crosstalk, grDevices,gridExtra, grid,viridisLite,dplyr,curl |
| Suggests: | knitr,rmarkdown,prettydoc |
| Published: | 2025-11-11 |
| DOI: | 10.32614/CRAN.package.gprofiler2 |
| Author: | Liis Kolberg [aut, cre], Uku Raudvere [aut] |
| Maintainer: | Liis Kolberg <liis.kolberg at ut.ee> |
| BugReports: | https://biit.cs.ut.ee/gprofiler/page/contact |
| License: | GPL-2 |GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Citation: | gprofiler2 citation info |
| In views: | Omics |
| CRAN checks: | gprofiler2 results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse imports: | ClustAssess,DFD,enrichViewNet,GWENA,MultiRNAflow,orthogene,PRONE,RCAS,scMappR,UniprotR |
| Reverse suggests: | clustifyr,knowYourCG,OmnipathR,rliger,scLANE |
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