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MUGS: Multisource Graph Synthesis with EHR Data

We develop Multi-source Graph Synthesis (MUGS), an algorithm designed to create embeddings for pediatric Electronic Health Record (EHR) codes by leveraging graphical information from three distinct sources: (1) pediatric EHR data, (2) EHR data from the general patient population, and (3) existing hierarchical medical ontology knowledge shared across different patient populations. See Li et al. (2024) <doi:10.1038/s41746-024-01320-4> for details.

Version:0.1.0
Depends:R (≥ 3.5.0)
Imports:MASS,Matrix,fastDummies,doSNOW,dplyr,grplasso,foreach,glmnet,grpreg,inline,mvtnorm,pROC, parallel,RcppArmadillo,rsvd, methods
Suggests:knitr,rmarkdown,testthat (≥ 3.0.0)
Published:2025-05-19
DOI:10.32614/CRAN.package.MUGS
Author:Mengyan Li [cre, aut], Thomas Charlon [ctb] (ORCID: 0000-0001-7497-0470), Xiaoou Li [aut], Tianxi Cai [aut], PARSE LTD [aut], CELEHS Team [aut]
Maintainer:Mengyan Li <mengyanli at bentley.edu>
License:GPL-3
URL:https://github.com/celehs/MUGS,https://celehs.github.io/MUGS/,https://doi.org/10.1038/s41746-024-01320-4
NeedsCompilation:no
Materials:README,NEWS
CRAN checks:MUGS results

Documentation:

Reference manual:MUGS.html ,MUGS.pdf
Vignettes:CodeEff_Matrix_usage (source,R code)
CodeSiteEff_I2_par_usage (source,R code)
DataGen_rare_group_usage (source,R code)
Evaluation_sim_usage (source,R code)
GroupEff_par_usage (source,R code)
get_embed_usage (source,R code)
Multisource Graph Synthesis with EHR Data (source,R code)

Downloads:

Package source: MUGS_0.1.0.tar.gz
Windows binaries: r-devel:MUGS_0.1.0.zip, r-release:MUGS_0.1.0.zip, r-oldrel:MUGS_0.1.0.zip
macOS binaries: r-release (arm64):MUGS_0.1.0.tgz, r-oldrel (arm64):MUGS_0.1.0.tgz, r-release (x86_64):MUGS_0.1.0.tgz, r-oldrel (x86_64):MUGS_0.1.0.tgz

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=MUGSto link to this page.


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