A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.
| Version: | 3.0.0 |
| Depends: | R (≥ 4.0.0) |
| Suggests: | assertthat,circlize,cli,cluster,colorspace,ComplexHeatmap,covr,decoupleR,dplyr (≥ 1.1.0),enrichplot,forcats,ggalluvial (≥ 0.12.5),ggbeeswarm,ggdist,ggExtra,ggh4x,ggplot2 (≥ 3.4.0),ggplotify,ggrastr,ggrepel,ggridges,ggsignif, graphics,infercnv,KernSmooth,knitr,labeling,magrittr,MASS,Matrix, methods,Nebulosa,org.Hs.eg.db,patchwork,pheatmap,plyr,purrr,qpdf,RColorBrewer,rjags,rlang,rmarkdown,scales,scattermore,Seurat,SeuratObject,sf,stringr,svglite,testthat (≥3.0.0),tibble,tidyr,UCell,viridis, waffle,withr |
| Published: | 2025-08-20 |
| DOI: | 10.32614/CRAN.package.SCpubr |
| Author: | Enrique Blanco-Carmona [cre, aut] |
| Maintainer: | Enrique Blanco-Carmona <scpubr at gmail.com> |
| BugReports: | https://github.com/enblacar/SCpubr/issues/ |
| License: | GPL-3 |
| URL: | https://github.com/enblacar/SCpubr/,https://enblacar.github.io/SCpubr-book/ |
| NeedsCompilation: | no |
| Citation: | SCpubr citation info |
| Materials: | README,NEWS |
| CRAN checks: | SCpubr results[issues need fixing before 2026-01-12] |