ypssc: Yeast-Proteome Secondary-Structure Calculator
An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.
| Version: | 1.1.0 |
| Depends: | R (≥ 2.10) |
| Imports: | spelling,dplyr,readxl,stringr,eulerr,Peptides, utils,svDialogs, tcltk |
| Suggests: | rmarkdown,testthat (≥ 3.0.0) |
| Published: | 2021-11-27 |
| DOI: | 10.32614/CRAN.package.ypssc |
| Author: | Sajad Tasharofi [aut, cph], Shashank Kumbhare [aut, cre, cph], Bent Petersen [aut], Morteza Khaledi [aut], Amir Shahmoradi [aut] |
| Maintainer: | Shashank Kumbhare <shashank.kumbhare at mavs.uta.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| In views: | Omics |
| CRAN checks: | ypssc results |
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