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FossilSim: Simulation and Plots for Fossil and Taxonomy Data

Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic models of speciation, preservation and sampling.

Version:2.4.3
Depends:R (≥ 2.10)
Imports:ape,ggtree,ggfun,ggplot2,tidytree, methods,rlang
Suggests:paleotree,knitr,rmarkdown,devtools,TreeSim,treeio,ggrepel
Published:2025-11-06
DOI:10.32614/CRAN.package.FossilSim
Author:Rachel Warnock [aut, cph], Joelle Barido-Sottani [aut, cre, cph], Walker Pett [aut, cph], O'Reilly Joseph [aut, cph], Ugnė Stolz [aut, cph]
Maintainer:Joelle Barido-Sottani <joelle.barido-sottani at m4x.org>
License:GPL-3
NeedsCompilation:no
Language:en-GB
Materials:README,NEWS
In views:Paleontology,Phylogenetics
CRAN checks:FossilSim results

Documentation:

Reference manual:FossilSim.html ,FossilSim.pdf
Vignettes:Exporting sampled ancestor trees (source,R code)
Simulating fossils (source,R code)
Introduction to FossilSim (source,R code)
Converting from and to paleotree format (source,R code)
Simulating trees from the fossilized birth-death process (source,R code)
Simulating taxonomy (source,R code)

Downloads:

Package source: FossilSim_2.4.3.tar.gz
Windows binaries: r-devel:FossilSim_2.4.3.zip, r-release:FossilSim_2.4.3.zip, r-oldrel:FossilSim_2.4.3.zip
macOS binaries: r-release (arm64):FossilSim_2.4.3.tgz, r-oldrel (arm64):FossilSim_2.4.3.tgz, r-release (x86_64):FossilSim_2.4.3.tgz, r-oldrel (x86_64):FossilSim_2.4.3.tgz
Old sources: FossilSim archive

Reverse dependencies:

Reverse imports:FossilSimShiny
Reverse suggests:admtools,StratPal

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=FossilSimto link to this page.

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