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anndata: 'anndata' for R

A 'reticulate' wrapper for the Python package 'anndata'. Provides a scalable way of keeping track of data and learned annotations. Used to read from and write to the h5ad file format.

Version:0.8.0
Depends:R (≥ 3.5.0)
Imports:assertthat,cli,lifecycle,Matrix, methods,R6,reticulate (≥ 1.41)
Suggests:stats,testthat,knitr,rmarkdown
Published:2025-05-27
DOI:10.32614/CRAN.package.anndata
Author:Philipp AngererORCID iD [ccp], Alex WolfORCID iD [ccp], Isaac VirshupORCID iD [ccp], Sergei RybakovORCID iD [ccp], Robrecht CannoodtORCID iD [aut, cre, cph]
Maintainer:Robrecht Cannoodt <rcannood at gmail.com>
BugReports:https://github.com/dynverse/anndata/issues
License:MIT + fileLICENSE
URL:https://anndata.dynverse.org,https://github.com/dynverse/anndata
NeedsCompilation:no
Materials:README,NEWS
CRAN checks:anndata results

Documentation:

Reference manual:anndata.html ,anndata.pdf
Vignettes:Getting started (source,R code)
Demo with scanpy (source,R code)

Downloads:

Package source: anndata_0.8.0.tar.gz
Windows binaries: r-devel:anndata_0.8.0.zip, r-release:anndata_0.8.0.zip, r-oldrel:anndata_0.8.0.zip
macOS binaries: r-release (arm64):anndata_0.8.0.tgz, r-oldrel (arm64):anndata_0.8.0.tgz, r-release (x86_64):anndata_0.8.0.tgz, r-oldrel (x86_64):anndata_0.8.0.tgz
Old sources: anndata archive

Reverse dependencies:

Reverse imports:BgeeDB,singleCellTK
Reverse suggests:dyngen,laminr,SCORPIUS,zellkonverter

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=anndatato link to this page.


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