mSigTools: Mutational Signature Analysis Tools
Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.
| Version: | 1.0.7 |
| Imports: | clue,philentropy,quadprog,sets |
| Suggests: | cosmicsig,ICAMS,spelling,testthat (≥ 3.0.0) |
| Published: | 2023-01-13 |
| DOI: | 10.32614/CRAN.package.mSigTools |
| Author: | Steven Rozen [aut, cre], Nanhai Jiang [aut] |
| Maintainer: | Steven Rozen <steverozen at pm.me> |
| BugReports: | https://github.com/Rozen-Lab/mSigTools/issues |
| License: | GPL-3 |
| URL: | https://github.com/Rozen-Lab/mSigTools |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | mSigTools citation info |
| Materials: | README,NEWS |
| CRAN checks: | mSigTools results |
Documentation:
| Reference manual: | mSigTools.html ,mSigTools.pdf |
Downloads:
| Package source: | mSigTools_1.0.7.tar.gz |
| Windows binaries: | r-devel:mSigTools_1.0.7.zip, r-release:mSigTools_1.0.7.zip, r-oldrel:mSigTools_1.0.7.zip |
| macOS binaries: | r-release (arm64):mSigTools_1.0.7.tgz, r-oldrel (arm64):mSigTools_1.0.7.tgz, r-release (x86_64):mSigTools_1.0.7.tgz, r-oldrel (x86_64):mSigTools_1.0.7.tgz |
| Old sources: | mSigTools archive |
Linking:
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