To cite the 'blackbox' package or the 'Migraine' software in publications use:
Rousset F (2023).blackbox: Black Box Optimization and Exploration of Parameter Space.doi:10.32614/CRAN.package.blackbox, R package version 1.1.46,https://CRAN.R-project.org/package=blackbox.
Rousset F, Leblois R (2007).“Likelihood and approximate likelihood analyses of genetic structure in a linear habitat: performance and robustness to model mis-specification.”Molecular Biology and Evolution,24, 2730-2745.https://doi.org/10.1093/molbev/msm206.
Rousset F, Leblois R (2012).“Likelihood-based inferences under isolation by distance: two-dimensional habitats and confidence intervals.”Molecular Biology and Evolution,29, 957-973.https://doi.org/10.1093/molbev/msr262.
Leblois R, Pudlo P, Néron J, Bertaux F, Beeravolu CR, Vitalis R, Rousset F (2014).“Maximum likelihood inference of population size contractions from microsatellite data.”Molecular Biology and Evolution,31, 2805-2823.https://doi.org/10.1093/molbev/msu212.
Corresponding BibTeX entries:
@Manual{, title = {blackbox: Black Box Optimization and Exploration of Parameter Space}, author = {François Rousset}, year = {2023}, note = {R package version 1.1.46}, url = {https://CRAN.R-project.org/package=blackbox}, doi = {10.32614/CRAN.package.blackbox}, } @Article{, author = {François Rousset and Raphaël Leblois}, title = {Likelihood and approximate likelihood analyses of genetic structure in a linear habitat: performance and robustness to model mis-specification}, journal = {Molecular Biology and Evolution}, year = {2007}, volume = {24}, pages = {2730-2745}, url = {https://doi.org/10.1093/molbev/msm206}, } @Article{, author = {François Rousset and Raphaël Leblois}, title = {Likelihood-based inferences under isolation by distance: two-dimensional habitats and confidence intervals}, journal = {Molecular Biology and Evolution}, year = {2012}, volume = {29}, pages = {957-973}, url = {https://doi.org/10.1093/molbev/msr262}, } @Article{, author = {Raphaël Leblois and Pierre Pudlo and Joseph Néron and François Bertaux and Champak Reddy Beeravolu and Renaud Vitalis and François Rousset}, title = {Maximum likelihood inference of population size contractions from microsatellite data}, journal = {Molecular Biology and Evolution}, year = {2014}, volume = {31}, pages = {2805-2823}, url = {https://doi.org/10.1093/molbev/msu212}, }