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vhica: Vertical and Horizontal Inheritance Consistence Analysis

The "Vertical and Horizontal Inheritance Consistence Analysis" method is described in the following publication: "VHICA: a new method to discriminate between vertical and horizontal transposon transfer: application to the mariner family within Drosophila" by G. Wallau. et al. (2016) <doi:10.1093/molbev/msv341>. The purpose of the method is to detect horizontal transfers of transposable elements, by contrasting the divergence of transposable element sequences with that of regular genes.

Version:	0.2.9
Suggests:	ape,plotrix, parallel,seqinr,gtools
Published:	2025-08-23
DOI:	10.32614/CRAN.package.vhica
Author:	Arnaud Le Rouzic [aut, cre]
Maintainer:	Arnaud Le Rouzic <arnaud.le-rouzic at universite-paris-saclay.fr>
License:	GPL-2
NeedsCompilation:	no
Materials:	README
In views:	Omics
CRAN checks:	vhica results

Documentation:

Reference manual:

vhica.html ,vhica.pdf

Downloads:

Package source:	vhica_0.2.9.tar.gz
Windows binaries:	r-devel:vhica_0.2.9.zip, r-release:vhica_0.2.9.zip, r-oldrel:vhica_0.2.9.zip
macOS binaries:	r-release (arm64):vhica_0.2.9.tgz, r-oldrel (arm64):vhica_0.2.9.tgz, r-release (x86_64):vhica_0.2.9.tgz, r-oldrel (x86_64):vhica_0.2.9.tgz
Old sources:	vhica archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=vhicato link to this page.