Multiscale embedded gene co-expression network analysis
This is a routine MEGENA pipeline description encompassing from datacorrelation analysis to module plotting, and is based on version 1.3.6https://CRAN.R-project.org/package=MEGENA.Please citethe paper below when MEGENA is applied as part of your analysis:
Song W.-M., Zhang B. (2015) Multiscale Embedded Gene Co-expressionNetwork Analysis. PLoS Comput Biol 11(11): e1004574. doi:10.1371/journal.pcbi.1004574.
For statistical mechanics aspects involved in MEGENA, pleasecheck:
Song W.-M., Di Matteo T.and Aste T., Building Complex Networks withPlatonic Solids, Physical Reivew E, 2012 Apr;85(4 Pt 2):046115.