FuncDiv is an R package for computing contributionaldiversity of joint taxa-function data.
It is described in this paper:Gavin M. Douglas,Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro. 2023. Efficientcomputation of contributional diversity metrics from microbiome datawith FuncDiv. Bioinformatics 39 (1): btac809. DOI:10.1093/bioinformatics/btac809
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Please see ourwiki site forthe documentation.
Licensing note: This repository contains modified code(specifically inR/beta_workflow.R andsrc/rbiom_par_unifrac.cpp) from version 1.0.3 of therbiom R package (link to original sourcecode). The original code andFuncDiv are distributed underGNU AfferoGeneral Public Licenses.