| Title: | INsulin Secretion ANalysEr |
| Version: | 1.0.3 |
| Description: | A user-friendly interface, using Shiny, to analyse glucose-stimulated insulin secretion (GSIS) assays in pancreatic beta cells or islets. The package allows the user to import several sets of experiments from different spreadsheets and to perform subsequent steps: summarise in a tidy format, visualise data quality and compare experimental conditions without omitting to account for technical confounders such as the date of the experiment or the technician. Together, insane is a comprehensive method that optimises pre-processing and analyses of GSIS experiments in a friendly-user interface. The Shiny App was initially designed for EndoC-betaH1 cell line following method described in Ndiaye et al., 2017 (<doi:10.1016/j.molmet.2017.03.011>). |
| License: | MIT + file LICENSE |
| URL: | https://github.com/mcanouil/insane/,https://m.canouil.dev/insane/ |
| BugReports: | https://github.com/mcanouil/insane/issues/ |
| Depends: | R (≥ 3.6.0) |
| Imports: | stats, utils, broom (≥ 0.5.6), dplyr (≥ 1.0.0), DT (≥0.13), ggplot2 (≥ 3.3.2), ggpubr (≥ 0.3.0), glue (≥ 1.4.1),patchwork (≥ 1.0.1), purrr (≥ 0.3.4), readxl (≥ 1.3.1),shiny (≥ 1.5.0), tidyr (≥ 1.1.0) |
| Suggests: | covr (≥ 3.5.0), roxygen2 (≥ 7.1.0), knitr (≥ 1.29),testthat (≥ 2.3.2), rmarkdown (≥ 2.3) |
| VignetteBuilder: | knitr |
| Encoding: | UTF-8 |
| RoxygenNote: | 7.2.3 |
| NeedsCompilation: | no |
| Packaged: | 2023-11-14 20:17:51 UTC; mcanouil |
| Author: | Mickaël Canouil [aut, cre] |
| Maintainer: | Mickaël Canouil <pro@mickael.canouil.dev> |
| Repository: | CRAN |
| Date/Publication: | 2023-11-14 21:50:02 UTC |
insane: INsulin Secretion ANalysEr
Description
A user-friendly interface, using Shiny, to analyse glucose-stimulated insulin secretion (GSIS) assays in pancreatic beta cells or islets. The package allows the user to import several sets of experiments from different spreadsheets and to perform subsequent steps: summarise in a tidy format, visualise data quality and compare experimental conditions without omitting to account for technical confounders such as the date of the experiment or the technician. Together, insane is a comprehensive method that optimises pre-processing and analyses of GSIS experiments in a friendly-user interface. The Shiny App was initially designed for EndoC-betaH1 cell line following method described in Ndiaye et al., 2017 (doi:10.1016/j.molmet.2017.03.011).
Author(s)
Maintainer: Mickaël Canouilpro@mickael.canouil.dev (ORCID)
See Also
Useful links:
Report bugs athttps://github.com/mcanouil/insane/issues/
Deploy the Shiny App
Description
Deploy (copy) the shiny application to the specified directory
Usage
deploy( directory = "/srv/shiny-server", app_name = "insane", demo = FALSE, overwrite = FALSE)Arguments
directory | [character] A character vector of one path to the new location. |
app_name | [character] A character vector defining the shiny application name in the new location. |
demo | [logical] A logical indicating if examples spreadsheets should be copied in the app. |
overwrite | [logical] A logical indicating if existing destination files should be overwritten. |
Value
[logical] A logical indicating whether the deployment is successfull (TRUE) or not (FALSE).
Examples
deploy(directory = ".")if (interactive()) { shiny::runApp("insane")}Run the Shiny Application
Description
Runs a Shiny application. This function normally does not return;interrupt R to stop the application (usually by pressing Ctrl+C or Esc).
Usage
go_insane( demo = FALSE, port = getOption("shiny.port"), launch.browser = getOption("shiny.launch.browser", interactive()), host = getOption("shiny.host", "127.0.0.1"), workerId = "", quiet = FALSE, display.mode = c("auto", "normal", "showcase"), test.mode = getOption("shiny.testmode", FALSE))Arguments
demo | [logical] A logical indicating if examples spreadsheets should be copied in the app. |
port | The TCP port that the application should listen on. If the |
launch.browser | If true, the system's default web browser will belaunched automatically after the app is started. Defaults to true ininteractive sessions only. The value of this parameter can also be afunction to call with the application's URL. |
host | The IPv4 address that the application should listen on. Defaultsto the |
workerId | Can generally be ignored. Exists to help some editions ofShiny Server Pro route requests to the correct process. |
quiet | Should Shiny status messages be shown? Defaults to FALSE. |
display.mode | The mode in which to display the application. If set tothe value |
test.mode | Should the application be launched in test mode? This isonly used for recording or running automated tests. Defaults to the |
Examples
if (interactive()) { library(insane) # Must be run in an interactive R session! go_insane()}