Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
| Version: | 1.12.21 |
| Depends: | R (≥ 3.4),bigstatsr (≥ 1.6.2) |
| Imports: | bigassertr (≥ 0.1.7),bigparallelr,bigsparser (≥ 0.6),bigreadr,bigutilsr (≥ 0.3.3),data.table (≥ 1.12.4),doRNG,foreach,ggplot2,magrittr,Matrix (≥ 1.3.0), methods,Rcpp,runonce (≥ 0.2.3), stats,vctrs |
| LinkingTo: | bigsparser,bigstatsr,Rcpp,RcppArmadillo (≥ 0.9.600),rmio,roptim (≥ 0.1.6) |
| Suggests: | bindata,covr,dbplyr (≥ 1.4),dplyr,gaston,glue,Hmisc,microbenchmark,pcadapt (≥ 4.1),quadprog,RhpcBLASctl,rmutil,RSpectra,RSQLite,R.utils,spelling,testthat,tibble,xgboost |
| Published: | 2025-08-21 |
| DOI: | 10.32614/CRAN.package.bigsnpr |
| Author: | Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni Jóhann Vilhjálmsson [ths] |
| Maintainer: | Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: | https://github.com/privefl/bigsnpr/issues |
| License: | GPL-3 |
| URL: | https://privefl.github.io/bigsnpr/ |
| NeedsCompilation: | yes |
| SystemRequirements: | A few functions from package 'bigsnpr' wrapexisting software such as 'PLINK'<www.cog-genomics.org/plink2>. Functions are provided todownload these software. Note that these external softwaremight not work for some operating systems (e.g. 'PLINK' mightnot work on Solaris). |
| Language: | en-US |
| Citation: | bigsnpr citation info |
| Materials: | README,NEWS |
| CRAN checks: | bigsnpr results |