InterSIM: Simulation of Inter-Related Genomic Datasets
Generates three inter-related genomic datasets: methylation, gene expression and protein expression having user specified cluster patterns. The simulation utilizes the realistic inter- and intra- relationships from real DNA methylation, mRNA expression and protein expression data from the TCGA ovarian cancer study, Chalise (2016) <doi:10.1016/j.cmpb.2016.02.011>.
| Version: | 2.3.0 |
| Depends: | R (≥ 3.5.0),MASS,NMF, tools |
| Published: | 2025-01-10 |
| DOI: | 10.32614/CRAN.package.InterSIM |
| Author: | Prabhakar Chalise [aut, cre], Rama Raghavan [aut], Brooke Fridley [aut] |
| Maintainer: | Prabhakar Chalise <pchalise at kumc.edu> |
| License: | GPL-2 |GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | InterSIM results |
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