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cfr: Estimate Disease Severity and Case Ascertainment

Estimate the severity of a disease and ascertainment of cases, as discussed in Nishiura et al. (2009) <doi:10.1371/journal.pone.0006852>.

Version:0.2.0
Depends:R (≥ 3.5.0)
Imports:checkmate, stats
Suggests:bookdown,data.table,distcrete,distributional,dplyr,forcats,ggplot2,incidence2,knitr,magrittr,purrr,rmarkdown,scales,spelling,testthat (≥ 3.0.0),tidyr
Published:2025-02-21
DOI:10.32614/CRAN.package.cfr
Author:Pratik R. GupteORCID iD [aut, cph], Adam KucharskiORCID iD [aut, cph, cre], Tim RussellORCID iD [aut, cph], Joshua W. LambertORCID iD [rev], Hugo GrusonORCID iD [rev], Tim TaylorORCID iD [rev], James M. AzamORCID iD [rev], Abdoelnaser M. DegootORCID iD [rev], Sebastian FunkORCID iD [rev]
Maintainer:Adam Kucharski <adam.kucharski at lshtm.ac.uk>
BugReports:https://github.com/epiverse-trace/cfr/issues
License:MIT + fileLICENSE
URL:https://github.com/epiverse-trace/cfr,https://epiverse-trace.github.io/cfr/
NeedsCompilation:no
Language:en-GB
Materials:README,NEWS
In views:Epidemiology
CRAN checks:cfr results

Documentation:

Reference manual:cfr.html ,cfr.pdf
Vignettes:Estimating disease severity while correcting for reporting delays (source,R code)
Handling data from {incidence2} (source,R code)
A primer on working with delay distributions (source,R code)
Estimating the proportion of cases that are ascertained during an outbreak (source,R code)
Estimating fatality risk from individual level data (source,R code)
Calculating a static, delay-adjusted estimate of disease severity (source,R code)
Estimating how disease severity varies over the course of an outbreak (source,R code)
Software permissions and regulations (source,R code)

Downloads:

Package source: cfr_0.2.0.tar.gz
Windows binaries: r-devel:cfr_0.2.0.zip, r-release:cfr_0.2.0.zip, r-oldrel:cfr_0.2.0.zip
macOS binaries: r-release (arm64):cfr_0.2.0.tgz, r-oldrel (arm64):cfr_0.2.0.tgz, r-release (x86_64):cfr_0.2.0.tgz, r-oldrel (x86_64):cfr_0.2.0.tgz
Old sources: cfr archive

Linking:

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