Movatterモバイル変換

[0]ホーム
URL:

VAM: Variance-Adjusted Mahalanobis

Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.

Version:1.1.0
Depends:R (≥ 3.6.0),MASS,Matrix
Imports:methods (≥ 3.6.0)
Suggests:Seurat (≥ 4.0.0),SeuratObject (≥ 4.0.0),sctransform (≥0.3.2)
Published:2023-11-05
DOI:10.32614/CRAN.package.VAM
Author:H. Robert Frost
Maintainer:H. Robert Frost <rob.frost at dartmouth.edu>
License:GPL-2 |GPL-3 [expanded from: GPL (≥ 2)]
Copyright:Dartmouth College
NeedsCompilation:no
Materials:NEWS
In views:Omics
CRAN checks:VAM results

Documentation:

Reference manual:VAM.html ,VAM.pdf
Vignettes:10x PBMC 3k log normalization Hallmark collection example (source)
10x PBMC 3k log normalization example (source)
10x PBMC 3k SCTransform example (source)
Seurat pbmc_small log normalization example (source,R code)
Seurat pbmc_small SCTransform example (source,R code)

Downloads:

Package source: VAM_1.1.0.tar.gz
Windows binaries: r-devel:VAM_1.1.0.zip, r-release:VAM_1.1.0.zip, r-oldrel:VAM_1.1.0.zip
macOS binaries: r-release (arm64):VAM_1.1.0.tgz, r-oldrel (arm64):VAM_1.1.0.tgz, r-release (x86_64):VAM_1.1.0.tgz, r-oldrel (x86_64):VAM_1.1.0.tgz
Old sources: VAM archive

Reverse dependencies:

Reverse imports:scaper,singleCellTK,STREAK

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=VAMto link to this page.

[8]ページ先頭
©2009-2025 Movatter.jp