protr: Generating Various Numerical Representation Schemes for ProteinSequences
Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html> for more information.
| Version: | 1.7-5 |
| Depends: | R (≥ 3.0.2) |
| Suggests: | knitr,rmarkdown,Biostrings,GOSemSim,foreach,doParallel,org.Hs.eg.db |
| Published: | 2025-08-21 |
| DOI: | 10.32614/CRAN.package.protr |
| Author: | Nan Xiao [aut, cre], Qing-Song Xu [aut], Dong-Sheng Cao [aut], Sebastian Mueller [ctb] (Alva Genomics) |
| Maintainer: | Nan Xiao <me at nanx.me> |
| BugReports: | https://github.com/nanxstats/protr/issues |
| License: | BSD_3_clause + fileLICENSE |
| URL: | https://nanx.me/protr/,https://github.com/nanxstats/protr,http://protr.org |
| NeedsCompilation: | no |
| SystemRequirements: | ncbi-blast+ (see<https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>) |
| Citation: | protr citation info |
| Materials: | README,NEWS |
| CRAN checks: | protr results |
Documentation:
| Reference manual: | protr.html ,protr.pdf |
| Vignettes: | protr: R package for generating various numerical representation schemes of protein sequences (source,R code) |
Downloads:
| Package source: | protr_1.7-5.tar.gz |
| Windows binaries: | r-devel:protr_1.7-5.zip, r-release:protr_1.7-5.zip, r-oldrel:protr_1.7-5.zip |
| macOS binaries: | r-release (arm64):protr_1.7-5.tgz, r-oldrel (arm64):protr_1.7-5.tgz, r-release (x86_64):protr_1.7-5.tgz, r-oldrel (x86_64):protr_1.7-5.tgz |
| Old sources: | protr archive |
Reverse dependencies:
| Reverse imports: | surfaltr |
Linking:
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