banffIT: Automated Standardized Assignment of the Banff Classification
Assigns standardized diagnoses using the Banff Classification (Category 1 to 6 diagnoses, including Acute and Chronic active T-cell mediated rejection as well as Active, Chronic active, and Chronic antibody mediated rejection). The main function considers a minimal dataset containing biopsies information in a specific format (described by a data dictionary), verifies its content and format (based on the data dictionary), assigns diagnoses, and creates a summary report. The package is developed on the reference guide to the Banff classification of renal allograft pathology Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>. The full description of the Banff classification is available at <https://banfffoundation.org/>.
| Version: | 2.0.0 |
| Depends: | R (≥ 3.4) |
| Imports: | dplyr (≥ 1.1.0),rlang, tools, utils,crayon,stringr,fs,lubridate,tidyr,fabR,madshapR (≥ 2.0.0) |
| Suggests: | knitr,rmarkdown,usethis |
| Published: | 2025-07-05 |
| DOI: | 10.32614/CRAN.package.banffIT |
| Author: | Guillaume Fabre [aut, cre], Ruth Sapir-Pichhadze [fnd, cph, ctb], Jan Ulrich Becker [ctb], Samuel El Bouzaïdi Tiali [ctb], Jérôme Laforme [ctb], Tina Wey [ctb], Edden Gitelman [ctb] |
| Maintainer: | Guillaume Fabre <guijoseph.fabre at gmail.com> |
| BugReports: | https://github.com/PersonalizedTransplantCare/banffIT/issues |
| License: | GPL-3 |
| URL: | https://github.com/PersonalizedTransplantCare/banffIT |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README,NEWS |
| CRAN checks: | banffIT results |
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