HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX)
Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.
| Version: | 1.2.4 |
| Depends: | R (≥ 4.0.0) |
| Imports: | fastglm,caret, parallel, methods, stats,glmnet,tune,recipes |
| Suggests: | knitr,rmarkdown |
| Published: | 2024-02-09 |
| DOI: | 10.32614/CRAN.package.HTRX |
| Author: | Yaoling Yang [aut, cre], Daniel Lawson [aut] |
| Maintainer: | Yaoling Yang <yaoling.yang at bristol.ac.uk> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | HTRX results |
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