hmde: Hierarchical Methods for Differential Equations
Wrapper for 'Stan' that offers a number of in-built models to implement a hierarchical Bayesian longitudinal model for repeat observation data. Model choice selects the differential equation that is fit to the observations. Single and multi-individual models are available. O'Brien et al. (2024) <doi:10.1111/2041-210X.14463>.
| Version: | 1.3 |
| Depends: | R (≥ 4.1.0) |
| Imports: | methods,dplyr,ggplot2,purrr,Rcpp (≥ 0.12.0),RcppParallel (≥ 5.0.1),rlang,rstan (≥ 2.18.1),rstantools (≥ 2.3.1.1),cowplot |
| LinkingTo: | BH (≥ 1.66.0),Rcpp (≥ 0.12.0),RcppEigen (≥ 0.3.3.3.0),RcppParallel (≥ 5.0.1),rstan (≥ 2.18.1),StanHeaders (≥2.18.0) |
| Suggests: | knitr,rmarkdown,testthat (≥ 3.0.0),withr,mnormt,here,patchwork,deSolve,mixtools,MASS |
| Published: | 2025-11-27 |
| DOI: | 10.32614/CRAN.package.hmde |
| Author: | Daniel Falster [aut, ctb], Tess O'Brien [aut, cre, cph], Fonti Kar [ctb], David Warton [aut, ctb] |
| Maintainer: | Tess O'Brien <tess_obrien at fastmail.com> |
| BugReports: | https://github.com/traitecoevo/hmde/issues |
| License: | GPL (≥ 3) |
| URL: | https://traitecoevo.github.io/hmde/ |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Materials: | README,NEWS |
| CRAN checks: | hmde results |
Documentation:
| Reference manual: | hmde.html ,hmde.pdf |
| Vignettes: | canham (source,R code) constant-growth (source,R code) Here be dragons (source,R code) hmde (source,R code) hmde for Mathematicians (source,R code) von-bertalanffy (source,R code) |
Downloads:
| Package source: | hmde_1.3.tar.gz |
| Windows binaries: | r-devel:hmde_1.3.zip, r-release:hmde_1.3.zip, r-oldrel:hmde_1.3.zip |
| macOS binaries: | r-release (arm64):hmde_1.3.tgz, r-oldrel (arm64):hmde_1.3.tgz, r-release (x86_64):hmde_1.3.tgz, r-oldrel (x86_64):hmde_1.3.tgz |
| Old sources: | hmde archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=hmdeto link to this page.