symphony: Efficient and Precise Single-Cell Reference Atlas Mapping
Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5) |
| Imports: | methods,Rcpp,harmony,uwot,irlba,class,purrr,dplyr,ggplot2, stats, utils,magrittr,data.table,tibble,Matrix,tidyr,rlang,RColorBrewer,RANN |
| LinkingTo: | Rcpp,RcppArmadillo |
| Suggests: | knitr,rmarkdown,testthat,ggthemes,ggrepel,ggrastr |
| Published: | 2025-10-31 |
| DOI: | 10.32614/CRAN.package.symphony |
| Author: | Joyce Kang [aut, cre], Ilya Korsunsky [aut], Soumya Raychaudhuri [aut] |
| Maintainer: | Joyce Kang <joyce_kang at hms.harvard.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| Materials: | README,NEWS |
| CRAN checks: | symphony results |
Documentation:
| Reference manual: | symphony.html ,symphony.pdf |
| Vignettes: | Quickstart PBMCs Tutorial (source,R code) |
Downloads:
| Package source: | symphony_0.1.2.tar.gz |
| Windows binaries: | r-devel:symphony_0.1.2.zip, r-release:symphony_0.1.2.zip, r-oldrel:symphony_0.1.2.zip |
| macOS binaries: | r-release (arm64):symphony_0.1.2.tgz, r-oldrel (arm64):symphony_0.1.2.tgz, r-release (x86_64):symphony_0.1.2.tgz, r-oldrel (x86_64):symphony_0.1.2.tgz |
| Old sources: | symphony archive |
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=symphonyto link to this page.