In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
| Version: | 0.0.9 |
| Depends: | R (≥ 3.0.1) |
| Imports: | Rcpp (≥ 0.11.1) |
| LinkingTo: | Rcpp |
| Suggests: | testthat |
| Published: | 2022-10-21 |
| DOI: | 10.32614/CRAN.package.TFMPvalue |
| Author: | Ge Tan |
| Maintainer: | Ge Tan <ge_tan at live.com> |
| BugReports: | https://github.com/ge11232002/TFMPvalue/issues |
| License: | GPL-2 |
| Copyright: | 2007 LIFL-USTL-INRIA |
| URL: | https://github.com/ge11232002/TFMPvalue |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| CRAN checks: | TFMPvalue results[issues need fixing before 2025-12-18] |
| Reference manual: | TFMPvalue.html ,TFMPvalue.pdf |
| Package source: | TFMPvalue_0.0.9.tar.gz |
| Windows binaries: | r-devel:TFMPvalue_0.0.9.zip, r-release:TFMPvalue_0.0.9.zip, r-oldrel:TFMPvalue_0.0.9.zip |
| macOS binaries: | r-release (arm64):TFMPvalue_0.0.9.tgz, r-oldrel (arm64):TFMPvalue_0.0.9.tgz, r-release (x86_64):TFMPvalue_0.0.9.tgz, r-oldrel (x86_64):TFMPvalue_0.0.9.tgz |
| Old sources: | TFMPvalue archive |
| Reverse imports: | motifbreakR,TFBSTools,transite |
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