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BioPred: An R Package for Biomarkers Analysis in Precision Medicine

Provides functions for training extreme gradient boosting model using propensity score A-learning and weight-learning methods. For further details, see Liu et al. (2024) <doi:10.1093/bioinformatics/btae592>.

Version:1.0.2
Depends:R (≥ 4.0.0)
Imports:xgboost,pROC,ggplot2,PropCIs,survival,survminer,mgcv,onewaytests,car
Suggests:knitr,rmarkdown,kableExtra
Published:2024-11-04
DOI:10.32614/CRAN.package.BioPred
Author:Zihuan Liu [aut, cre], Yan Sun [aut], Xin Huang [aut]
Maintainer:Zihuan Liu <zihuan.liu at abbvie.com>
License:GPL-3
NeedsCompilation:no
Language:en
Materials:README
CRAN checks:BioPred results

Documentation:

Reference manual:BioPred.html ,BioPred.pdf
Vignettes:BioPred Package Tutorial (source,R code)

Downloads:

Package source: BioPred_1.0.2.tar.gz
Windows binaries: r-devel:BioPred_1.0.2.zip, r-release:BioPred_1.0.2.zip, r-oldrel:BioPred_1.0.2.zip
macOS binaries: r-release (arm64):BioPred_1.0.2.tgz, r-oldrel (arm64):BioPred_1.0.2.tgz, r-release (x86_64):BioPred_1.0.2.tgz, r-oldrel (x86_64):BioPred_1.0.2.tgz
Old sources: BioPred archive

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=BioPredto link to this page.


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